Here's how to check if a public key has already been imported into the rpmdb. # rpmdb_verify Packages. You are currently viewing LQ as a guest. To check that the rpm --rebuilddb command has not damaged the RPM database, you can check with a file listing, query all packages, and then check the results of the rpm ârebuilddb command with another file listing when done. The message âWarning: RPMDB altered outside of yumâ displayed when the yum command is not finished completely or interrupted while running any yum transaction and rpmdb does not completed the rpm database editing. # package-cleanup --help Loaded plugins: fastestmirror Usage: package-cleanup: helps find problems in the rpmdb of system and correct them usage: package-cleanup --problems or --leaves or --orphans or - ⦠Problem with yum update say: ** Found 3 pre-existing rpmdb problem(s), 'yum check' output follows: glibc-2.12-1.80.el6.x86_64 is a duplicate with glibc-2.12-1.47.el6_2.12.x86_64 ** Found 1 pre-existing rpmdb problem(s), 'yum check' output follows: varnish-release-4.1-2.el7.noarch is a duplicate with varnish-release-3.0-1.el6.noarch This manifests in a yum update going awry, telling us something along the lines of this: The result is that your system has two copies of many packages where only one is allowed - these are the "210 pre-existing rpmdb problems" yum complains about. Otherwise we need to repair each problem by hand, which could be quite tricky. I have the situation that the server is experiencing problems with duplicate packages in the Yum update. # yum update --disableplugin=priorities --enablerepo=remi Loaded plugins: faste - Pastebin.com, # yum -y update Loaded plugins: fastestmirror, priorities, versionlock base - Pastebin.com, --> Processing Dependency: NetworkManager-libnm(x86-64) = 1:1.4.0-20.el7_3 for p - Pastebin.com, # yum -y update Loaded plugins: fastestmirror, priorities, versionlock varnish - Pastebin.com, CentOS 7.0 - man page for yum.conf (centos section 5) - Unix & Linux Commands, # yum -y update Loaded plugins: fastestmirror, priorities, versionlock Loading - Pastebin.com, (You must log in or sign up to reply here. When doing yum operations I get this message at the end of whatever yum was doing:** Found 1 pre-existing rpmdb problem(s), yum check output follows:brscan4-0.4.8-1.x86_64 is a duplicate with brscan4-0.4.3-1.x86_64It is true, if I do rpm -qa | grep brs..Read more sk. Make a backup of /var/lib/rpm. The RPM database is made up of files under the /var/lib/rpm/ directory in CentOS and other enterprise Linux distributions such as RHEL, openSUSE, Oracle Linux and more.. Make sure you have disk space available, that you can reach your package repository and that the system is otherwise healthy. Duplicate (or triplicate, or quadruplicate, etc.) yum update fails with rpmdb errors. By joining our community you will have the ability to post topics, receive our newsletter, use the advanced search, subscribe to threads and access many other special features. In this guide we will go through the steps of resolving âYUMâ, sometimes yum encounters errors, it can cause RPMDB (database) as inconsistent, duplicate packages are installed, because yum cleanup and verification process is incomplete, which could be possibly ⦠Method # 2. Attempted to do an rpm ⦠Welcome to LinuxQuestions.org, a friendly and active Linux Community. keys do not cause any problems, but are unnecessary clutter in the rpmdb. Further reading. Removing stale locks. After a failed yum transaction, yum-complete-transaction fails to complete and the duplicates are still present. If you only have a few packages, you can jump ahead to make a backup of the RPMDBIf you have several packages, create a text file like. I am Senthil Kumar, more commonly known as SK to my friends, from India. Warning: RPMDB altered outside of yum. How to solve this in a way that does not have to cause a stop, or that causes a problem in the server, since it is an internet server, proxy and email ⦠This document provides an overview of how to deal with RPM database corruption. rpm command â rpm is a powerful Package Manager for Linux. One such way to do that is: For just some packages do this individually for each one, changing. You will probably have to clean those as well before running yum again. CentOS provides a utility to find and remove duplicate packages, as well as clean other package issues. If we can resume and complete that transaction, yum might finish its cleanup and solve the problems. Damaged header instance error; rpm command terminates with "cannot open Packages database in /var/lib/rpm" Why does rpm or yum terminate with rpmdb: Lock table is out of available locker entries? yum fails with is a duplicate with package-cleanup --cleandupes fails with Error: Depsolving loop limit reached If you are still getting errors, then try your luck with following commands: # mv Packages Packages-BAKUP # db_dump Packages-BAKUP | db_load Packages # rpm -qa # rpm --rebuilddb. *** This bug has been marked as a duplicate ⦠RPM Database Recovery. Home » Knowledge Base » How to fix duplicate packages in yum From time to time, the yum package manager may encounter issues with duplicate packages that are erroneously installed on a system. If an RPM command hangs, segfaults, or otherwise behaves abnormally during use then the first task is to check for stale lock files. If the RPM database is corrupted, RPM will not work correctly, thus updates cannot be applied to your system, you encounter errors while updating packages on your system via YUM package manager. Maybe you ran out of disk space or something interrupted the install, but you are left with a system that is suspect. Ask Question Asked 7 years, 5 months ago. How to remove the older versions of a package which has multiple versions installed on Red Hat Enterprise Linux? First get a listing of the packages using the, Find the latest version of each file. rpmdb problems (package.new is a duplicate of package.old) After patching your system the yum update exits or fails leaving you in an unknown state. How to fix duplicate packages in yum January 7, 2017 January 7, 2017 - by Jay Versluis From time to time, the yum package manager may encounter issues with duplicate packages that are erroneously installed on a system. puppet error managing solaris users: Could not evaluate: undefined method `strip’ for nil:NilClass, cannot open Packages index using db3 – Cannot allocate memory, Using netcat, nc or ncat for testing network connectivity (instead of telnet). ** Found 1 pre-existing rpmdb problem(s), 'yum check' output follows:python-2.6.6-37.el6_4.x86_64 is a duplicate with python-2.6.5-3.el6.x86_64-----é rpm -e --nodeps --justdb
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